Assoc. Prof. Alice Sijts
Head of Research Group | T-Cell Tolerance
Alice Sijts’ research aims to develop regulatory T cell-based therapies to dampen intestinal inflammations and allergies.
Network of Chlamydia trachomatis antigens presented on infected HeLa cells.
Quote from Assoc. Prof. Alice Sijts
Cells interact with their environment by displaying proteins on their surface, a tightly regulated process that can lead to different outcomes depending on the protein presented. Gaining insight into these diverse effects on the immune system may help us to improve immunotherapies.
Head of Research Group T-Cell Tolerance
Biography
Academic background and qualifications
Alice Sijts studied at the University of Leiden and the Netherlands Cancer Institute (NKI) in Amsterdam, and received her PhD from Leiden University in 1994. During her PhD, she studied murine CD8 T cell-mediated anti-tumor immunity under the supervision of C. Melief, a pioneer in the field of tumour immunotherapy at the time. Following her PhD, she was trained in the filed of antigen processing by Eli Serzarz at the UCLA / USA, Eric Pamer at Yale University / USA and Peter Kloetzel at the Charite in Berlin / Germany.
Professional career
Since being an independent PI, she has i) explored different aspects of regulatory T cell-mediated immune regulation, as well as ii) antigen processing dynamics of different microbes in relation to the elicited immune responses. Most recently, her group generated a high-resolution profile of the MHC immunopeptidomes of bacterially infected cells and found that commonly detected antigens included virulence factors and evolutionary highly conserved proteins, present in several different bacterial pathogens as well commensals within the gastro-intestinal tract. This knowledge is exploited in her current projects.
Visit the complete publications list on Google Scholar:
https://scholar.google.com/citations?user=ou3_GU0AAAAJ&hl=en
Here is a selection of the most important publications from the last few years:
- Cormican JA, Medfai L, Wawrzyniuk M, Pasen M, Afrache H, Fourny C, Khan S, Gneisse P, Soh WT, Timelli A, Nolfi E, Pannekoek Y, Cope A, Urlaub H, Sijts A, Mishto M, Liepe J. PEPSeek-mediated identification of novel epitopes from viral and bacterial pathogens and the impact on host cell immunopeptidomes. Mol Cell Proteomics. 2025 Mar 3.100937. doi:10.1016/j.mcpro.2025.100937. PMID: 40044041
- Platteel ACM, Liepe J, Textoris-Taube K, Keller C, Henklein P, Schalkwijk HH, Cardoso R, Kloetzel PM, Mishto M, Sijts A. Multi-level Strategy for Identifying Proteasome-Catalyzed Spliced Epitopes Targeted by CD8(+) T Cells during Bacterial Infection. Cell Rep. 2017 Aug 1. 20:1242-1253. doi:10.1016/j.celrep.2017.07.026. PMID: 28768206
- Minutti CM, Drube S, Blair N, Schwartz C, McCrae JC, McKenzie AN, Kamradt T, Mokry M, Coffer PJ, Sibilia M, Sijts AJ, Fallon PG, Maizels RM, Zaiss DM. Epidermal Growth Factor Receptor Expression Licenses Type-2 Helper T Cells to Function in a T Cell Receptor-Independent Fashion. Immunity. 2017 Oct 17. 47:710-722 e716. doi:10.1016/j.immuni.2017.09.013. PMID: 29045902
- Zaiss DM, van Loosdregt J, Gorlani A, Bekker CP, Grone A, Sibilia M, van Bergen en Henegouwen PM, Roovers RC, Coffer PJ, Sijts AJ. Amphiregulin enhances regulatory T cell-suppressive function via the epidermal growth factor receptor. Immunity. 2013 Feb 21. 38:275-284. doi:10.1016/j.immuni.2012.09.023. PMID: 23333074
- van Loosdregt J, Fleskens V, Fu J, Brenkman AB, Bekker CP, Pals CE, Meerding J, Berkers CR, Barbi J, Grone A, Sijts AJ, Maurice MM, Kalkhoven E, Prakken BJ, Ovaa H, Pan F, Zaiss DM, Coffer PJ. Stabilization of the transcription factor Foxp3 by the deubiquitinase USP7 increases Treg-cell-suppressive capacity. Immunity. 2013 Aug 22. 39:259-271. doi:10.1016/j.immuni.2013.05.018. PMID: 23973222
- Sijts EJ, Kloetzel PM. The role of the proteasome in the generation of MHC class I ligands and immune responses. Cell Mol Life Sci. 2011 May. 68:1491-1502. doi:10.1007/s00018-011-0657-y. PMID: 21387144
- Seifert U, Liermann H, Racanelli V, Halenius A, Wiese M, Wedemeyer H, Ruppert T, Rispeter K, Henklein P, Sijts A, Hengel H, Kloetzel PM, Rehermann B. Hepatitis C virus mutation affects proteasomal epitope processing. J Clin Invest. 2004 Jul. 114:250-259. doi:10.1172/JCI20985. PMID: 15254592
- Zaiss DM, Standera S, Kloetzel PM, Sijts AJ. PI31 is a modulator of proteasome formation and antigen processing. Proc Natl Acad Sci U S A. 2002 Oct 29. 99:14344-14349. doi:10.1073/pnas.212257299. PMID: 12374861
- Kessler JH, Beekman NJ, Bres-Vloemans SA, Verdijk P, van Veelen PA, Kloosterman-Joosten AM, Vissers DC, ten Bosch GJ, Kester MG, Sijts A, Wouter Drijfhout J, Ossendorp F, Offringa R, Melief CJ. Efficient identification of novel HLA-A(*)0201-presented cytotoxic T lymphocyte epitopes in the widely expressed tumor antigen PRAME by proteasome-mediated digestion analysis. J Exp Med. 2001 Jan 1. 193:73-88. doi:10.1084/jem.193.1.73. PMID: 11136822
- van Hall T, Sijts A, Camps M, Offringa R, Melief C, Kloetzel PM, Ossendorp F. Differential influence on cytotoxic T lymphocyte epitope presentation by controlled expression of either proteasome immunosubunits or PA28. J Exp Med. 2000 Aug 21. 192:483-494. doi:10.1084/jem.192.4.483. PMID: 10952718
- Sijts AJ, Ruppert T, Rehermann B, Schmidt M, Koszinowski U, Kloetzel PM. Efficient generation of a hepatitis B virus cytotoxic T lymphocyte epitope requires the structural features of immunoproteasomes. J Exp Med. 2000 Feb 7. 191:503-514. doi:10.1084/jem.191.3.503. PMID: 10662796
- Sijts AJ, Pamer EG. Enhanced intracellular dissociation of major histocompatibility complex class I-associated peptides: a mechanism for optimizing the spectrum of cell surface-presented cytotoxic T lymphocyte epitopes. J Exp Med. 1997 Apr 21. 185:1403-1411. doi:10.1084/jem.185.8.1403. PMID: 9126921
- Ossendorp F, Eggers M, Neisig A, Ruppert T, Groettrup M, Sijts A, Mengede E, Kloetzel PM, Neefjes J, Koszinowski U, Melief C. A single residue exchange within a viral CTL epitope alters proteasome-mediated degradation resulting in lack of antigen presentation. Immunity. 1996 Aug. 5:115-124. doi:10.1016/s1074-7613(00)80488-4. PMID: 8769475
Many thanks to the funding agencies who support our work:
Innovative Medicines Initiative (IMI) 2 – European Union’s Horizon 2020 research and innovation programme and EFPIA
Innovations to accelerate vaccine development and manufacture. Grant agreement No 101007799 (Inno4Vac). 2021-2027
European Commission Horizon 2020-MSCA-ITN/ETN
Novel vaccine vectors to resist pathogen challenge. Grant agreement No. 812915 (VacPath) 2019-2024 (coordinator)
Here are some of the partners with whom the Research Group has recently collaborated:
Utrecht University Faculty of Veterinary Medicine, Immunology section headed by Prof. Dr. F. Broere
LIT Cooperation Group Immune Cell Communication – Professor Dietmar M.W. Zaiss
Inno4Vac consortium
Inno4Vac is a public-private partnership that aims to develop predictive models of vaccine performance and bio-manufacturing. A cloud-based platform for in silico vaccine efficacy assessment and development, and controlled human infection and cell-based human in vitro 3D models are developed to enable early evaluation of vaccine efficacy and prediction of immune protection.
VacPath consortium
VacPath is an Innovative Training Networks (ITN) aiming to develop novel vector-based vaccines that elicit mucosal immunity against the intracellular pathogens.
Group of Michele Mishto (Crick Institute, London, UK)
https://www.crick.ac.uk/research/labs/michele-mishto
Group of Juliane Liepe (Max Planck Institute Göttingen, Germany)
Assoc. Prof. E.J.A.M. (Alice) Sijts
Email: E.J.A.M.Sijts@uu.nl